If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ), 'gf_id' => 'HOM05D000838', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000838' ), 'data_identifier' => 'HOM05D000838', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000838', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27440' => 'bna', 'Aa31LG8G5980' => 'aar', 'Aa31LG9G12760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1006' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1007' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1612' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1613' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2838' => 'aag', 'Actinidia00449' => 'ach', 'Actinidia12055' => 'ach', 'Actinidia12959' => 'ach', 'Actinidia17862' => 'ach', 'Actinidia17863' => 'ach', 'Actinidia17866' => 'ach', 'Actinidia23830' => 'ach', 'Actinidia27953' => 'ach', 'Actinidia29867' => 'ach', 'Actinidia36499' => 'ach', 'Actinidia38054' => 'ach', 'Ah.01g006680' => 'amhyb', 'Ah.01g006690' => 'amhyb', 'Ah.02g124210' => 'amhyb', 'Ah.05g168800' => 'amhyb', 'AL3G32560' => 'aly', 'AL8G18460' => 'aly', 'AL8G34380' => 'aly', 'Aqoxy1G04089' => 'aox', 'Aqoxy1G04092' => 'aox', 'Aqoxy1G04097' => 'aox', 'Aqoxy1G04180' => 'aox', 'Aqoxy4G00939' => 'aox', 'Aqoxy4G01098' => 'aox', 'Aqoxy4G01103' => 'aox', 'Aqoxy4G02221' => 'aox', 'Aqoxy4G02222' => 'aox', 'Aqoxy4G03287' => 'aox', 'Aqoxy4G03307' => 'aox', 'Aqoxy5G01256' => 'aox', 'Aqoxy5G01257' => 'aox', 'Aqoxy5G01258' => 'aox', 'Aqoxy6G01355' => 'aox', 'Aqoxy6G03020' => 'aox', 'Aqoxy7G01756' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6FQ15B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DF1HSU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1PS0M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PNEU8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TW50GZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZQ919F' => 'arhy', 'AT3G19184' => 'ath', 'AT5G42700' => 'ath', 'AT5G58280' => 'ath', 'ATR0733G182' => 'atr', 'ATR1127G154' => 'atr', 'Atru.chr13.654' => 'acertr', 'Atru.chr3.345' => 'acertr', 'Atru.chr3.346' => 'acertr', 'Atru.chr5.2734' => 'acertr', 'Atru.chr5.2735' => 'acertr', 'Atru.chr5.2737' => 'acertr', 'Atru.chr5.2739' => 'acertr', 'Atru.chr8.795' => 'acertr', 'AUR62001941' => 'cqu', 'AUR62003512' => 'cqu', 'AUR62003865' => 'cqu', 'AUR62003866' => 'cqu', 'AUR62011071' => 'cqu', 'AUR62011442' => 'cqu', 'AUR62016620' => 'cqu', 'AUR62017063' => 'cqu', 'AUR62017823' => 'cqu', 'AUR62022421' => 'cqu', 'AUR62022423' => 'cqu', 'AUR62033454' => 'cqu', 'AUR62040652' => 'cqu', 'AUR62042175' => 'cqu', 'AUR62042177' => 'cqu', 'BcaB01g00391' => 'bca', 'BcaB01g03206' => 'bca', 'BcaB07g30605' => 'bca', 'BcaC03g16514' => 'bca', 'BcaC08g47520' => 'bca', 'BolC2t10382H' => 'bol', 'BraA02t07773Z' => 'bra', 'C02p43320' => 'bna', 'CAN.G1041.25' => 'can', 'CAN.G1041.26' => 'can', 'CAN.G1041.27' => 'can', 'CAN.G1041.29' => 'can', 'CAN.G181.26' => 'can', 'CAN.G330.7' => 'can', 'CAN.G371.32' => 'can', 'CAN.G836.75' => 'can', 'CANSAT01G0264' => 'cansat', 'CANSAT11G2709' => 'cansat', 'CANSAT25G1305' => 'cansat', 'CANSAT25G2449' => 'cansat', 'CANSAT25G2864' => 'cansat', 'CANSAT54G1365' => 'cansat', 'CARHR094590' => 'chi', 'CARHR272080' => 'chi', 'Carub.0003s1901' => 'cru', 'Carub.0008s0626' => 'cru', 'Carub.0008s1882' => 'cru', 'Ca_15955_v3' => 'car', 'Ca_19503_v3' => 'car', 'CBR_g50785' => 'cbr', 'Cc01_g15440' => 'ccan', 'Cc02_g18670' => 'ccan', 'Cc02_g18680' => 'ccan', 'Cc07_g05930' => 'ccan', 'Cc08_g05820' => 'ccan', 'Cc08_g09050' => 'ccan', 'Cc10_g04280' => 'ccan', 'CDE12G0648' => 'cde', 'Cfa004008' => 'cfa', 'Cfa005473' => 'cfa', 'Cfa009909' => 'cfa', 'Cfa011853' => 'cfa', 'Ciclev10002314m.g' => 'ccl', 'Ciclev10002972m.g' => 'ccl', 'Ciclev10003383m.g' => 'ccl', 'Ciclev10017326m.g' => 'ccl', 'Ciclev10025376m.g' => 'ccl', 'Ciclev10028399m.g' => 'ccl', 'Ciclev10029072m.g' => 'ccl', 'Ciclev10030084m.g' => 'ccl', 'CiPaw.01G019200' => 'cil', 'CiPaw.05G052000' => 'cil', 'CiPaw.05G052100' => 'cil', 'CiPaw.06G143100' => 'cil', 'CiPaw.14G049000' => 'cil', 'ClCG02G005860' => 'cla', 'ClCG02G012790' => 'cla', 'ClCG05G009920' => 'cla', 'ClCG08G015750' => 'cla', 'COL.COLO4_11229' => 'col', 'COL.COLO4_11398' => 'col', 'COL.COLO4_21689' => 'col', 'COL.COLO4_26481' => 'col', 'COL.COLO4_30551' => 'col', 'COL.COLO4_32671' => 'col', 'COL.COLO4_37356' => 'col', 'Cpa.g.sc2.268' => 'cpa', 'Cpa.g.sc55.163' => 'cpa', 'Cpa.g.sc62.23' => 'cpa', 'Cpa.g.sc62.24' => 'cpa', 'Cpa.g.sc62.25' => 'cpa', 'Cpa.g.sc62.26' => 'cpa', 'CsaV3_2G016860' => 'csa', 'CsaV3_2G028000' => 'csa', 'CsaV3_2G028010' => 'csa', 'CsaV3_3G018660' => 'csa', 'CsaV3_7G008670' => 'csa', 'CSS0004698' => 'camsi', 'CSS0005346' => 'camsi', 'CSS0007617' => 'camsi', 'CSS0008602' => 'camsi', 'CSS0010825' => 'camsi', 'CSS0019898' => 'camsi', 'CSS0027638' => 'camsi', 'CSS0027782' => 'camsi', 'CSS0027910' => 'camsi', 'CSS0031460' => 'camsi', 'CSS0046873' => 'camsi', 'CSS0049516' => 'camsi', 'CSS0049720' => 'camsi', 'DCAR_004791' => 'dca', 'DCAR_010717' => 'dca', 'DCAR_019127' => 'dca', 'DCAR_019459' => 'dca', 'DCAR_022032' => 'dca', 'DCAR_025729' => 'dca', 'DCAR_029029' => 'dca', 'DCAR_029030' => 'dca', 'DCAR_029031' => 'dca', 'DCAR_031803' => 'dca', 'Dinv28752' => 'din', 'Dinv29978' => 'din', 'Dinv39863' => 'din', 'Dinv42145' => 'din', 'Dinv42146' => 'din', 'Dinv42147' => 'din', 'Duzib052G0760' => 'dzi', 'Duzib052G1042' => 'dzi', 'Duzib116G0471' => 'dzi', 'Duzib132G0610' => 'dzi', 'Duzib132G0647' => 'dzi', 'Duzib132G1154' => 'dzi', 'Duzib147G1356' => 'dzi', 'Duzib168G0735' => 'dzi', 'Duzib264G1128' => 'dzi', 'ECA232G4646' => 'eca', 'ECA234G0186' => 'eca', 'ECA234G3040' => 'eca', 'ECA236G3387' => 'eca', 'ECA236G3914' => 'eca', 'ECA246G2719' => 'eca', 'ECA247G0162' => 'eca', 'ECA247G1689' => 'eca', 'ECA247G2518' => 'eca', 'EL10Ac1g01718' => 'bvu', 'EL10Ac6g15759' => 'bvu', 'EL10Ac6g15760' => 'bvu', 'EL10Ac7g16687' => 'bvu', 'EL10Ac8g18594' => 'bvu', 'EL10Ac9g21833' => 'bvu', 'Eucgr.E01478' => 'egr', 'Eucgr.F02358' => 'egr', 'Eucgr.G01455' => 'egr', 'Eucgr.G01458' => 'egr', 'Eucgr.H01651' => 'egr', 'Eucgr.H02009' => 'egr', 'Eucgr.I01218' => 'egr', 'FAN11G3054' => 'fan', 'FAN15G0539' => 'fan', 'FAN15G1179' => 'fan', 'FAN15G1217' => 'fan', 'FAN15G1499' => 'fan', 'FAN15G1741' => 'fan', 'FAN15G2289' => 'fan', 'FAN15G2307' => 'fan', 'FAN15G2572' => 'fan', 'FAN15G3161' => 'fan', 'FAN15G3217' => 'fan', 'FAN16G1700' => 'fan', 'FAN18G1208' => 'fan', 'FAN19G2049' => 'fan', 'FAN20G0231' => 'fan', 'FAN20G1141' => 'fan', 'FAN20G2317' => 'fan', 'FAN20G2440' => 'fan', 'FAN20G2676' => 'fan', 'FAN20G2994' => 'fan', 'FAN20G3029' => 'fan', 'FAN21G3661' => 'fan', 'FAN24G0511' => 'fan', 'FAN24G2820' => 'fan', 'FAN25G2158' => 'fan', 'FAN26G0593' => 'fan', 'FAN27G0127' => 'fan', 'FAN27G1081' => 'fan', 'FAN27G2722' => 'fan', 'FAN27G3351' => 'fan', 'FAN28G1460' => 'fan', 'FAN28G2914' => 'fan', 'FvH4_1g15900' => 'fve', 'FvH4_2g06280' => 'fve', 'FvH4_2g06290' => 'fve', 'FvH4_2g06300' => 'fve', 'FvH4_2g06310' => 'fve', 'FvH4_2g06320' => 'fve', 'FvH4_2g06330' => 'fve', 'FvH4_2g34580' => 'fve', 'FvH4_2g34591' => 'fve', 'FvH4_2g39190' => 'fve', 'FvH4_2g41030' => 'fve', 'FvH4_3g40930' => 'fve', 'Glyma.01G244800' => 'gma', 'Glyma.02G237500' => 'gma', 'Glyma.04G037800' => 'gma', 'Glyma.06G038900' => 'gma', 'Glyma.17G175500' => 'gma', 'Gohir.A01G006500' => 'ghi', 'Gohir.A01G119000' => 'ghi', 'Gohir.A03G189966' => 'ghi', 'Gohir.A03G190032' => 'ghi', 'Gohir.A11G191300' => 'ghi', 'Gohir.A13G039500' => 'ghi', 'Gohir.D01G006600' => 'ghi', 'Gohir.D01G107200' => 'ghi', 'Gohir.D02G210600' => 'ghi', 'Gohir.D02G210700' => 'ghi', 'Gohir.D11G198100' => 'ghi', 'Gohir.D13G038100' => 'ghi', 'Gorai.002G007600' => 'gra', 'Gorai.002G131600' => 'gra', 'Gorai.005G238600' => 'gra', 'Gorai.005G238700' => 'gra', 'Gorai.007G212100' => 'gra', 'Gorai.013G042700' => 'gra', 'GSVIVG01009519001' => 'vvi', 'GSVIVG01022143001' => 'vvi', 'GSVIVG01024536001' => 'vvi', 'GSVIVG01031761001' => 'vvi', 'GSVIVG01031762001' => 'vvi', 'GSVIVG01031763001' => 'vvi', 'HanXRQChr02g0037701' => 'han', 'HanXRQChr04g0128231' => 'han', 'HanXRQChr04g0128251' => 'han', 'HanXRQChr07g0191551' => 'han', 'HanXRQChr07g0191561' => 'han', 'HanXRQChr07g0191571' => 'han', 'HanXRQChr08g0234231' => 'han', 'HanXRQChr09g0263571' => 'han', 'HanXRQChr10g0289011' => 'han', 'HanXRQChr10g0289021' => 'han', 'HanXRQChr10g0301701' => 'han', 'HanXRQChr10g0301711' => 'han', 'HanXRQChr11g0340711' => 'han', 'HanXRQChr11g0340761' => 'han', 'HanXRQChr11g0340781' => 'han', 'HanXRQChr11g0340801' => 'han', 'HanXRQChr12g0378961' => 'han', 'HanXRQChr12g0378971' => 'han', 'HanXRQChr13g0391821' => 'han', 'HanXRQChr15g0490441' => 'han', 'HanXRQChr15g0490451' => 'han', 'HanXRQChr16g0508461' => 'han', 'HanXRQChr16g0508471' => 'han', 'Haze_01838' => 'cav', 'Haze_01839' => 'cav', 'Haze_01843' => 'cav', 'Haze_01844' => 'cav', 'Haze_15417' => 'cav', 'Haze_24487' => 'cav', 'Hma1.2p1_0200F.1_g085930' => 'hma', 'Hma1.2p1_0370F.1_g137925' => 'hma', 'Hma1.2p1_0370F.1_g137930' => 'hma', 'Hma1.2p1_0718F.1_g208380' => 'hma', 'Hma1.2p1_0718F.1_g208390' => 'hma', 'Hma1.2p1_0718F.1_g208430' => 'hma', 'HPP92_009383' => 'vpl', 'HPP92_015442' => 'vpl', 'Hund06179' => 'sun', 'Hund17580' => 'sun', 'Lalb_Chr00c02g0404131' => 'lal', 'Lalb_Chr00c02g0404151' => 'lal', 'Lalb_Chr08g0245601' => 'lal', 'Lalb_Chr17g0345691' => 'lal', 'Lalb_Chr23g0267011' => 'lal', 'Lj1g0006917' => 'lja', 'Lj1g0022581' => 'lja', 'Lj2A1104T78' => 'lonja', 'Lj2A75G40' => 'lonja', 'Lj3g0002495' => 'lja', 'Lj4A86T100' => 'lonja', 'Lj4C144G10' => 'lonja', 'Lj4C54T4' => 'lonja', 'Lj4C852G0' => 'lonja', 'Lj4g0019963' => 'lja', 'Lj4g0026222' => 'lja', 'Lj7A68T84' => 'lonja', 'Lj7A68T86' => 'lonja', 'Lj7C68G10' => 'lonja', 'Lj9P358T38' => 'lonja', 'LjContig00141g0023563' => 'lja', 'Lsat_1_v5_gn_1_20940' => 'lsa', 'Lsat_1_v5_gn_3_91001' => 'lsa', 'Lsat_1_v5_gn_4_166040' => 'lsa', 'Lsat_1_v5_gn_4_166060' => 'lsa', 'Lsat_1_v5_gn_4_166080' => 'lsa', 'Lsat_1_v5_gn_5_112901' => 'lsa', 'Lsat_1_v5_gn_6_89741' => 'lsa', 'Lsat_1_v5_gn_7_87081' => 'lsa', 'Lsat_1_v5_gn_7_87101' => 'lsa', 'Lsat_1_v5_gn_9_13380' => 'lsa', 'Manes.07G082100' => 'mes', 'Manes.10G066000' => 'mes', 'Manes.12G155800' => 'mes', 'Manes.13G127300' => 'mes', 'Mapoly0015s0164' => 'mpo', 'MBI02_g17330_MAGBIO' => 'mbi', 'MBI06_g24643_MAGBIO' => 'mbi', 'MBI15_g31040_MAGBIO' => 'mbi', 'MBI18_g42304_MAGBIO' => 'mbi', 'MCO02G428' => 'mco', 'MD00G1040300' => 'mdo', 'MD02G1170800' => 'mdo', 'MD03G1047900' => 'mdo', 'MD05G1077500' => 'mdo', 'MD05G1079100' => 'mdo', 'MD05G1079200' => 'mdo', 'MD08G1102800' => 'mdo', 'MD08G1102900' => 'mdo', 'MD10G1092700' => 'mdo', 'MD10G1093000' => 'mdo', 'MD10G1093200' => 'mdo', 'MD15G1084300' => 'mdo', 'MD15G1084400' => 'mdo', 'MD15G1282300' => 'mdo', 'Medtr2g102450' => 'mtr', 'Medtr3g101520' => 'mtr', 'Medtr4g008310' => 'mtr', 'Medtr4g101970' => 'mtr', 'MELO3C010880.2' => 'cme', 'MELO3C010881.2' => 'cme', 'MELO3C018443.2' => 'cme', 'MELO3C019502.2' => 'cme', 'MELO3C020897.2' => 'cme', 'Migut.B00331' => 'egut', 'Migut.B00332' => 'egut', 'Migut.B00333' => 'egut', 'Migut.B00334' => 'egut', 'Migut.C00137' => 'egut', 'Migut.C00592' => 'egut', 'Migut.D00805' => 'egut', 'Migut.H00442' => 'egut', 'Migut.H01031' => 'egut', 'Migut.H01038' => 'egut', 'Migut.H01039' => 'egut', 'Migut.H01040' => 'egut', 'Migut.H01041' => 'egut', 'Migut.K00763' => 'egut', 'Migut.N01191' => 'egut', 'Migut.N01192' => 'egut', 'Migut.N01193' => 'egut', 'Migut.N01194' => 'egut', 'MSTRG.1338' => 'ama', 'MSTRG.15393' => 'ama', 'MSTRG.16750' => 'ama', 'MSTRG.16751' => 'ama', 'MSTRG.20149' => 'ama', 'MSTRG.21265' => 'ama', 'MSTRG.23757' => 'ama', 'MSTRG.2888' => 'ama', 'MSTRG.3422' => 'ama', 'Nitab4.5_0000310g0050' => 'nta', 'Nitab4.5_0000686g0040' => 'nta', 'Nitab4.5_0001034g0090' => 'nta', 'Nitab4.5_0001101g0130' => 'nta', 'Nitab4.5_0002167g0020' => 'nta', 'Nitab4.5_0003080g0120' => 'nta', 'Nitab4.5_0003194g0040' => 'nta', 'Nitab4.5_0003503g0040' => 'nta', 'Nitab4.5_0003503g0050' => 'nta', 'Nn2g10224' => 'nnu', 'Nn2g10231' => 'nnu', 'Nn5g30238' => 'nnu', 'Nn5g30239' => 'nnu', 'Oeu006960.1' => 'oeu', 'Oeu007279.1' => 'oeu', 'Oeu009023.2' => 'oeu', 'Oeu009750.1' => 'oeu', 'Oeu009751.1' => 'oeu', 'Oeu009813.1' => 'oeu', 'Oeu011396.1' => 'oeu', 'Oeu013700.2' => 'oeu', 'Oeu013701.3' => 'oeu', 'Oeu024301.1' => 'oeu', 'Oeu043553.1' => 'oeu', 'Os01g0234100' => 'osa', 'Os03g0184500' => 'osa', 'Os05g0481400' => 'osa', 'Os06g0194400' => 'osa', 'Peaxi162Scf00016g01953' => 'pax', 'Peaxi162Scf00131g10121' => 'pax', 'Peaxi162Scf00252g01219' => 'pax', 'Peaxi162Scf00319g00009' => 'pax', 'Peaxi162Scf00450g00738' => 'pax', 'PGR031G1572' => 'pgr', 'PGR042G1151' => 'pgr', 'PGR042G1266' => 'pgr', 'PGR102G0306' => 'pgr', 'PGR102G2156' => 'pgr', 'PGR142G0059' => 'pgr', 'PGR142G0798' => 'pgr', 'PGR142G3367' => 'pgr', 'PGR142G3670' => 'pgr', 'PGSC0003DMG400008022' => 'stu', 'PGSC0003DMG400015771' => 'stu', 'PGSC0003DMG400020648' => 'stu', 'PGSC0003DMG400021583' => 'stu', 'PGSC0003DMG400025790' => 'stu', 'PGSC0003DMG400025791' => 'stu', 'PGSC0003DMG400025792' => 'stu', 'PGSC0003DMG400036020' => 'stu', 'PGSC0003DMG400040025' => 'stu', 'PGSC0003DMG400040864' => 'stu', 'PGSC0003DMG400045077' => 'stu', 'Phvul.003G244400' => 'pvu', 'Phvul.008G244300' => 'pvu', 'Phvul.009G064100' => 'pvu', 'Potri.004G141800' => 'ptr', 'Potri.004G141900' => 'ptr', 'Potri.005G137600' => 'ptr', 'Potri.007G042500' => 'ptr', 'Potri.009G103100' => 'ptr', 'Potri.009G103200' => 'ptr', 'Potri.009G103300' => 'ptr', 'Potri.009G103400' => 'ptr', 'Potri.014G031600' => 'ptr', 'Potri.014G031700' => 'ptr', 'Potri.018G140700' => 'ptr', 'Pp3c14_19410' => 'ppa', 'Pp3c14_21500' => 'ppa', 'Pp3c17_16150' => 'ppa', 'Pp3c19_19230' => 'ppa', 'Pp3c1_15410' => 'ppa', 'Pp3c21_16260' => 'ppa', 'Pp3c22_2550' => 'ppa', 'Pp3c22_9950' => 'ppa', 'Pp3c27_4910' => 'ppa', 'Pp3c2_5990' => 'ppa', 'Pp3c7_12680' => 'ppa', 'PRCOL_00005474' => 'pco', 'Prupe.1G437800' => 'ppe', 'Prupe.1G437900' => 'ppe', 'Prupe.1G438000' => 'ppe', 'Prupe.6G038900' => 'ppe', 'Prupe.7G134800' => 'ppe', 'Prupe.8G122500' => 'ppe', 'Prupe.8G122600' => 'ppe', 'Prupe.8G122700' => 'ppe', 'Prupe.8G122800' => 'ppe', 'Psat4g087000' => 'psa', 'Psat5g043480' => 'psa', 'Psat5g077200' => 'psa', 'Psat5g077240' => 'psa', 'PSO017G1576' => 'pso', 'PSO017G1639' => 'pso', 'PSO017G2028' => 'pso', 'PSO017G3069' => 'pso', 'PSO063G3010' => 'pso', 'PSO063G4039' => 'pso', 'PSO104G0110' => 'pso', 'PSO104G0153' => 'pso', 'PSO104G0212' => 'pso', 'PSO104G0269' => 'pso', 'PSO135G0268' => 'pso', 'PSO135G1043' => 'pso', 'PSO170G1088' => 'pso', 'PSO170G1252' => 'pso', 'PSO170G1393' => 'pso', 'PSO170G2895' => 'pso', 'PSO170G4603' => 'pso', 'PSO210G0174' => 'pso', 'PSO210G6063' => 'pso', 'PSO339G0023' => 'pso', 'PSO339G0157' => 'pso', 'PSO339G0421' => 'pso', 'PSO339G1898' => 'pso', 'PSO339G3471' => 'pso', 'PSO339G3801' => 'pso', 'PSO339G3830' => 'pso', 'PSO339G3923' => 'pso', 'PSO339G4147' => 'pso', 'PSO339G4246' => 'pso', 'PSO339G4864' => 'pso', 'PSO339G5856' => 'pso', 'PSO339G6499' => 'pso', 'PSO339G6549' => 'pso', 'PSO384G0530' => 'pso', 'PSO384G0907' => 'pso', 'PSO421G0466' => 'pso', 'PSO478G4995' => 'pso', 'PSO513G0028' => 'pso', 'PSO532G0025' => 'pso', 'PSO541G5413' => 'pso', 'PSO541G5844' => 'pso', 'PSO675G4528' => 'pso', 'PSO675G8336' => 'pso', 'PSO687G0001' => 'pso', 'PSO717G0006' => 'pso', 'PSO717G0047' => 'pso', 'PSO724G0011' => 'pso', 'PSO724G0228' => 'pso', 'PSO724G0374' => 'pso', 'PSO724G0777' => 'pso', 'PSO801G0221' => 'pso', 'PSO801G0260' => 'pso', 'PSO801G0427' => 'pso', 'PSO801G0765' => 'pso', 'QL01p023780' => 'qlo', 'QL02p005302' => 'qlo', 'QL02p005311' => 'qlo', 'QL02p005325' => 'qlo', 'QL06p041780' => 'qlo', 'QL11p036107' => 'qlo', 'QL11p036115' => 'qlo', 'QL11p036123' => 'qlo', 'QL11p036135' => 'qlo', 'RcHm_v2.0_Chr2g0105291' => 'rch', 'RcHm_v2.0_Chr5g0073681' => 'rch', 'RcHm_v2.0_Chr5g0083161' => 'rch', 'RcHm_v2.0_Chr6g0256791' => 'rch', 'RcHm_v2.0_Chr6g0256801' => 'rch', 'RcHm_v2.0_Chr6g0256811' => 'rch', 'RcHm_v2.0_Chr6g0256821' => 'rch', 'RcHm_v2.0_Chr6g0256841' => 'rch', 'RcHm_v2.0_Chr6g0258071' => 'rch', 'RcHm_v2.0_Chr6g0258081' => 'rch', 'RcHm_v2.0_Chr6g0258121' => 'rch', 'RcHm_v2.0_Chr6g0258181' => 'rch', 'RcHm_v2.0_Chr6g0258201' => 'rch', 'RcHm_v2.0_Chr6g0258211' => 'rch', 'RcHm_v2.0_Chr6g0299531' => 'rch', 'RcHm_v2.0_Chr6g0301871' => 'rch', 'RcHm_v2.0_Chr6g0307571' => 'rch', 'RcHm_v2.0_Chr6g0307581' => 'rch', 'RcHm_v2.0_Chr6g0307721' => 'rch', 'RcHm_v2.0_Chr6g0307731' => 'rch', 'Rhsim01G0099000' => 'rsi', 'Rhsim01G0244500' => 'rsi', 'Rhsim05G0083100' => 'rsi', 'Rhsim05G0083200' => 'rsi', 'Rhsim05G0109300' => 'rsi', 'Rhsim07G0229600' => 'rsi', 'Rhsim11G0166600' => 'rsi', 'Rhsim11G0166700' => 'rsi', 'Rhsim11G0166800' => 'rsi', 'Sabra07G0037700' => 'sbr', 'Sabra09G0079000' => 'sbr', 'Sabra09G0079100' => 'sbr', 'Sabra14G0055400' => 'sbr', 'Sabra15G0075900' => 'sbr', 'Sabra18G0114900' => 'sbr', 'SalBow1G3810' => 'sbo', 'SalBow3G2101' => 'sbo', 'SalBow6G2508' => 'sbo', 'SalBow6G6886' => 'sbo', 'Sc07g0001360' => 'sci', 'Sc11g0004210' => 'sci', 'Sc16g0004810' => 'sci', 'Sc16g0004840' => 'sci', 'Sc26g0004000' => 'sci', 'Sc26g0004010' => 'sci', 'Sed0000574' => 'sed', 'Sed0001767' => 'sed', 'Sed0001768' => 'sed', 'Sed0019706' => 'sed', 'Sed0024658' => 'sed', 'Sed0026519' => 'sed', 'Sed0027612' => 'sed', 'SEGI_08004' => 'sgi', 'SEGI_35561' => 'sgi', 'SGA_v2.0_scaffold15G07285' => 'sas', 'SGA_v2.0_scaffold208G41985' => 'sas', 'SGA_v2.0_scaffold32G13069' => 'sas', 'SGA_v2.0_scaffold32G13070' => 'sas', 'SGA_v2.0_scaffold393G50690' => 'sas', 'SGA_v2.0_scaffold90G27669' => 'sas', 'SGA_v2.0_scaffold90G27670' => 'sas', 'SHI05376' => 'shi', 'SMO200G0112' => 'smo', 'SMO265G0014' => 'smo', 'Solyc01g108120.3' => 'sly', 'Solyc01g108130.4' => 'sly', 'Solyc01g108140.4' => 'sly', 'Solyc02g090710.3' => 'sly', 'Solyc03g063180.1' => 'sly', 'Solyc04g079130.2' => 'sly', 'Solyc06g007530.2' => 'sly', 'Solyc06g034140.3' => 'sly', 'Sopen01g050350' => 'spe', 'Sopen01g050360' => 'spe', 'Sopen01g050370' => 'spe', 'Sopen02g035340' => 'spe', 'Sopen04g032740' => 'spe', 'Sopen06g002440' => 'spe', 'Sopen06g010800' => 'spe', 'Sp2g07220' => 'spa', 'Sp5g34660' => 'spa', 'TAR381G0125' => 'tar', 'TAR628G1072' => 'tar', 'TAR633G0539' => 'tar', 'THA.LOC104798798' => 'tha', 'THA.LOC104799348' => 'tha', 'THA.LOC104813207' => 'tha', 'Thecc.01G054300' => 'tca', 'Thecc.02G098900' => 'tca', 'Thecc.02G099000' => 'tca', 'Thecc.02G099200' => 'tca', 'Thecc.02G099300' => 'tca', 'Thecc.08G010600' => 'tca', 'Thhalv10019015m.g' => 'esa', 'TPR.G10254' => 'tpr', 'TPR.G18418' => 'tpr', 'TPR.G1884' => 'tpr', 'TPR.G1889' => 'tpr', 'TPR.G20576' => 'tpr', 'TPR.G2166' => 'tpr', 'TPR.G24380' => 'tpr', 'TPR.G25995' => 'tpr', 'TPR.G28118' => 'tpr', 'TPR.G37644' => 'tpr', 'TPR.G551' => 'tpr', 'TPR.G5883' => 'tpr', 'TWI36G1517' => 'twi', 'TWI75G0645' => 'twi', 'TWI79G0758' => 'twi', 'TWI79G0856' => 'twi', 'unitig_60.g25452' => 'ugi', 'unitig_61.g25999' => 'ugi', 'unitig_736.g22661' => 'ugi', 'unitig_736.g22662' => 'ugi', 'unitig_899.g14657' => 'ugi', 'vmacro02193' => 'vma', 'vmacro02194' => 'vma', 'vmacro02195' => 'vma', 'vmacro02196' => 'vma', 'vmacro02197' => 'vma', 'vmacro02198' => 'vma', 'vmacro02199' => 'vma', 'vmacro04456' => 'vma', 'vmacro05331' => 'vma', 'vmacro14653' => 'vma', 'vmacro15069' => 'vma', 'vmacro17047' => 'vma', 'vmacro19495' => 'vma', 'vmacro19496' => 'vma', 'vmacro19497' => 'vma', 'VMungo0251G0613' => 'vmu', 'VMungo0647G1604' => 'vmu', 'VMungo1309G0097' => 'vmu', 'Zm00001eb006360' => 'zma', 'Zm00001eb161000' => 'zma', 'Zm00001eb171080' => 'zma', 'Zm00001eb290900' => 'zma', 'Zm00001eb401610' => 'zma', 'Zm00001eb413890' => 'zma' ) $gf_id = 'HOM05D000838' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000838' ) $data_identifier = 'HOM05D000838' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 2, 'aar' => (int) 2, 'aag' => (int) 6, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 3, 'aox' => (int) 17, 'arhy' => (int) 6, 'ath' => (int) 3, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 15, 'bca' => (int) 5, 'bol' => (int) 1, 'bra' => (int) 1, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 2, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 32, 'fve' => (int) 12, 'gma' => (int) 5, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 6, 'han' => (int) 23, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 5, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 14, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 18, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 4, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 3, 'ptr' => (int) 11, 'ppa' => (int) 11, 'pco' => (int) 1, 'ppe' => (int) 9, 'psa' => (int) 4, 'pso' => (int) 54, 'qlo' => (int) 9, 'rch' => (int) 20, 'rsi' => (int) 9, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 2, 'tar' => (int) 3, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 1, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 5, 'vma' => (int) 15, 'vmu' => (int) 3, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb413890' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1